Geoduck and Oyster scRNAseq Top Marker Gene Comparison


Megan Ewing


January 7, 2024

Write up for this github issue

Github repo available here

The Data

Two scRNAseq annotated files containing top marker genes. One for geoduck one for oyster.

The Workflow

This one was pretty short. I read in both of the files, which had annotations for the top marker genes, and joined them based on their common gene id’s. The resulting matches show the top marker genes shared by both. The output was then written to a csv.